J4_9F9S_015

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9F9S|1|M1|A|1452, 9F9S|1|M1|U|1455, 9F9S|1|M1|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9F9S_015 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.0656

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|M1|C|1451
9F9S|1|M1|A|1452
9F9S|1|M1|A|1453
9F9S|1|M1|A|1454
9F9S|1|M1|U|1455
9F9S|1|M1|A|1456
9F9S|1|M1|U|1457
*
9F9S|1|M1|A|1475
9F9S|1|M1|G|1476
*
9F9S|1|M1|U|1877
9F9S|1|M1|G|1878
9F9S|1|M1|A|1879
9F9S|1|M1|U|1880
*
9F9S|1|M1|A|2352
9F9S|1|M1|G|2353

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MK

60S ribosomal protein L17-A

Chain MM

60S ribosomal protein L19-A

Chain Mn

60S ribosomal protein L31-A