J4_9F9S_019
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9F9S|1|M1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_019 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1372
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|M1|C|2192
9F9S|1|M1|U|2193
9F9S|1|M1|G|2194
*
9F9S|1|M1|C|2248
9F9S|1|M1|G|2249
*
9F9S|1|M1|C|2267
9F9S|1|M1|U|2268
9F9S|1|M1|U|2269
9F9S|1|M1|A|2270
9F9S|1|M1|A|2271
9F9S|1|M1|G|2272
9F9S|1|M1|G|2273
9F9S|1|M1|U|2274
9F9S|1|M1|A|2275
9F9S|1|M1|G|2276
*
9F9S|1|M1|U|2310
9F9S|1|M1|G|2311
9F9S|1|M1|A|2312
9F9S|1|M1|A|2313
9F9S|1|M1|U|2314
9F9S|1|M1|G|2315
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain DQ
- Transfer RNA; tRNA
- Chain Md
- 60S ribosomal protein L41-A
- Chain Mw
- 60S ribosomal protein L2-A
- Chain R1
- Small subunit ribosomal RNA; SSU rRNA
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