J4_9F9S_025
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9F9S|1|S1|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_025 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.0733
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|S1|C|99
9F9S|1|S1|A|100
9F9S|1|S1|U|101
9F9S|1|S1|U|102
9F9S|1|S1|A|103
9F9S|1|S1|A|104
9F9S|1|S1|A|105
9F9S|1|S1|U|106
9F9S|1|S1|C|107
*
9F9S|1|S1|G|307
9F9S|1|S1|C|308
9F9S|1|S1|C|309
*
9F9S|1|S1|G|357
9F9S|1|S1|U|358
9F9S|1|S1|A|359
9F9S|1|S1|A|360
9F9S|1|S1|C|361
*
9F9S|1|S1|G|383
9F9S|1|S1|G|384
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Se
- 40S ribosomal protein S4-A
- Chain Si
- 40S ribosomal protein S8-A
- Chain Sl
- 40S ribosomal protein S11-A
- Chain Sx
- 40S ribosomal protein S23-A
Coloring options: