J4_9FBV_002

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9FBV|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FBV_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.085

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9FBV|1|A|G|142
9FBV|1|A|A|143
9FBV|1|A|G|144
*
9FBV|1|A|C|178
9FBV|1|A|A|179
9FBV|1|A|U|180
9FBV|1|A|A|181
9FBV|1|A|A|182
9FBV|1|A|C|183
9FBV|1|A|G|184
*
9FBV|1|A|C|193
9FBV|1|A|C|194
9FBV|1|A|A|195
9FBV|1|A|A|196
9FBV|1|A|A|197
9FBV|1|A|G|198
*
9FBV|1|A|U|219
9FBV|1|A|G|220
9FBV|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20