J4_9FBV_004
3D structure
- PDB id
- 9FBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with P-site initiatior tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9FBV|1|Z|U|8, 9FBV|1|Z|U|47, 9FBV|1|Z|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9FBV_004 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2129
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9FBV|1|Z|G|7
9FBV|1|Z|U|8
9FBV|1|Z|G|9
9FBV|1|Z|G|10
*
9FBV|1|Z|C|25
9FBV|1|Z|G|26
9FBV|1|Z|U|27
*
9FBV|1|Z|A|43
9FBV|1|Z|A|44
9FBV|1|Z|G|45
9FBV|1|Z|G|46
9FBV|1|Z|U|47
9FBV|1|Z|C|48
9FBV|1|Z|G|49
*
9FBV|1|Z|C|65
9FBV|1|Z|C|66
Current chains
- Chain Z
- fMet-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- Small ribosomal subunit protein uS13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: