J4_9FBV_005

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9FBV|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FBV_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1194

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9FBV|1|a|C|268
9FBV|1|a|C|269
*
9FBV|1|a|G|370
9FBV|1|a|A|371
9FBV|1|a|G|372
9FBV|1|a|U|373
9FBV|1|a|A|374
9FBV|1|a|G|375
*
9FBV|1|a|U|399
9FBV|1|a|G|400
9FBV|1|a|A|401
9FBV|1|a|A|402
9FBV|1|a|U|403
9FBV|1|a|A|404
9FBV|1|a|U|405
9FBV|1|a|G|406
*
9FBV|1|a|C|421
9FBV|1|a|A|422
9FBV|1|a|A|423
9FBV|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28