J4_9FCO_002

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9FCO|1|B|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FCO_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0876

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9FCO|1|B|G|142
9FCO|1|B|A|143
9FCO|1|B|G|144
*
9FCO|1|B|C|178
9FCO|1|B|A|179
9FCO|1|B|U|180
9FCO|1|B|A|181
9FCO|1|B|A|182
9FCO|1|B|C|183
9FCO|1|B|G|184
*
9FCO|1|B|C|193
9FCO|1|B|C|194
9FCO|1|B|A|195
9FCO|1|B|A|196
9FCO|1|B|A|197
9FCO|1|B|G|198
*
9FCO|1|B|U|219
9FCO|1|B|G|220
9FCO|1|B|C|221

Current chains

Chain B

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20