J4_9FIA_001
3D structure
- PDB id
- 9FIA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU(body) structure derived from the SSU sample of the mitoribosome from T. gondii.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CAAUGCCCAAGGCAGAGCAC*GGGAACUGUGCUCCCAUUAAUAA*UUUG*CGUAAAAAG
- Length
- 56 nucleotides
- Bulged bases
- 9FIA|1|bE|C|42, 9FIA|1|bE|G|67, 9FIA|1|bE|U|71, 9FIA|1|bE|U|73, 9FIA|1|bE|A|80, 9FIA|1|bE|U|82, 9FIA|1|bE|A|83, 9FIA|1|bE|A|84, 9FIA|1|bE|U|85, 9FIA|1|bE|A|86, 9FIA|1|bO|A|103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FIA|1|bE|C|30
9FIA|1|bE|A|31
9FIA|1|bE|A|32
9FIA|1|bE|U|33
9FIA|1|bE|G|34
9FIA|1|bE|C|35
9FIA|1|bE|C|36
9FIA|1|bE|C|37
9FIA|1|bE|A|38
9FIA|1|bE|A|39
9FIA|1|bE|G|40
9FIA|1|bE|G|41
9FIA|1|bE|C|42
9FIA|1|bE|A|43
9FIA|1|bE|G|44
9FIA|1|bE|A|45
9FIA|1|bE|G|46
9FIA|1|bE|C|47
9FIA|1|bE|A|48
9FIA|1|bE|C|49
*
9FIA|1|bE|G|65
9FIA|1|bE|G|66
9FIA|1|bE|G|67
9FIA|1|bE|A|68
9FIA|1|bE|A|69
9FIA|1|bE|C|70
9FIA|1|bE|U|71
9FIA|1|bE|G|72
9FIA|1|bE|U|73
9FIA|1|bE|G|74
9FIA|1|bE|C|75
9FIA|1|bE|U|76
9FIA|1|bE|C|77
9FIA|1|bE|C|78
9FIA|1|bE|C|79
9FIA|1|bE|A|80
9FIA|1|bE|U|81
9FIA|1|bE|U|82
9FIA|1|bE|A|83
9FIA|1|bE|A|84
9FIA|1|bE|U|85
9FIA|1|bE|A|86
9FIA|1|bE|A|87
*
9FIA|1|bN|U|3
9FIA|1|bN|U|4
9FIA|1|bN|U|5
9FIA|1|bN|G|6
*
9FIA|1|bO|C|96
9FIA|1|bO|G|97
9FIA|1|bO|U|98
9FIA|1|bO|A|99
9FIA|1|bO|A|100
9FIA|1|bO|A|101
9FIA|1|bO|A|102
9FIA|1|bO|A|103
9FIA|1|bO|G|104
Current chains
- Chain bE
- RNA8
- Chain bN
- SSUB
- Chain bO
- SSUA
Nearby chains
- Chain B3
- Mitochondrial ribosomal protein, mS23
- Chain B9
- DnaJ domain-containing protein
- Chain BA
- Mitochondrial ribosomal protein, mS137
- Chain BH
- Putative ribosomal protein S8
- Chain BI
- unidentified peptide
- Chain BJ
- unidentified peptide
- Chain BL
- Putative ribosomal protein S17
- Chain BO
- Putative 30S ribosomal protein S15
- Chain BS
- Ribosomal protein, bS21m
- Chain Bj
- unidentified peptide
- Chain Bl
- 30S ribosomal protein S12, putative
- Chain HS
- Acylphosphatase-like domain-containing protein
- Chain bA
- RNA19
- Chain bK
- RNA5
- Chain bP
- ulr16
- Chain bS
- url18
- Chain bT
- SSUF
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