J4_9G06_005

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUGGAG*CUCGU*AAGGUCG*CC

Length

20 nucleotides

Bulged bases

9G06|1|a|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G06|1|a|G|7
9G06|1|a|U|8
9G06|1|a|G|9
9G06|1|a|G|10
9G06|1|a|A|11
9G06|1|a|G|12
*
9G06|1|a|C|23
9G06|1|a|U|24
9G06|1|a|C|25
9G06|1|a|G|26
9G06|1|a|U|27
*
9G06|1|a|A|43
9G06|1|a|A|44
9G06|1|a|G|45
9G06|1|a|G|46
9G06|1|a|U|47
9G06|1|a|C|48
9G06|1|a|G|49
*
9G06|1|a|C|65
9G06|1|a|C|66

Current chains

Chain a

fMet-tRNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain J

Translation initiation factor IF-3

Chain M

Small ribosomal subunit protein uS13