J4_9G1Z_005

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9G1Z_005 not in the Motif Atlas

Homologous match to J4_8CRE_005

Geometric discrepancy: 0.0594

The information below is about J4_8CRE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9G1Z|1|1|G|1670
9G1Z|1|1|G|1671
*
9G1Z|1|1|C|1689
9G1Z|1|1|U|1690
*
9G1Z|1|1|A|1748
9G1Z|1|1|G|1749
*
9G1Z|1|1|U|1768
9G1Z|1|1|C|1769

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

Ribosomal 60S subunit protein L22B

Chain AH

Large ribosomal subunit protein eL34

Chain AL

Ribosomal 60S subunit protein L38