J4_9G1Z_006
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G1Z_006 not in the Motif Atlas
- Homologous match to J4_8CRE_006
- Geometric discrepancy: 0.0552
- The information below is about J4_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9G1Z|1|1|G|2108
9G1Z|1|1|A|2109
9G1Z|1|1|C|2110
9G1Z|1|1|U|2111
9G1Z|1|1|G|2112
*
9G1Z|1|1|C|2124
9G1Z|1|1|A|2125
9G1Z|1|1|U|2126
9G1Z|1|1|A|2127
9G1Z|1|1|G|2128
*
9G1Z|1|1|U|2164
9G1Z|1|1|G|2165
9G1Z|1|1|A|2166
9G1Z|1|1|U|2167
9G1Z|1|1|U|2168
*
9G1Z|1|1|A|2295
9G1Z|1|1|U|2296
9G1Z|1|1|U|2297
9G1Z|1|1|A|2298
9G1Z|1|1|A|2299
9G1Z|1|1|C|2300
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain AQ
- Ribosomal 60S subunit protein L43A
- Chain j
- Ribosomal 60S subunit protein L2A
Coloring options: