Motif J4_07509.2 Version J4_07509.2 of this group appears in releases 3.95 to 3.97

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	break		11		12		13		14		15	break		16		17		18		19		20		21	1-21	2-19	3-8	4-7	5-6	9-12	10-11	13-18	15-16
1	J4_8P9A_017	8P9A	0.0635	0	AR	LSU rRNA	G	2130	A	2131	C	2132	U	2133	G	2134	*	C	2146	A	2147	U	2148	A	2149	G	2150	*	U	2186	G	2187	A	2188	U	2189	U	2190	*	A	2317	U	2318	U	2319	A	2320	A	2321	C	2322	cWW	tSW	ntHSa	tHS	cWW	tHS	cWW	ntHS	cWW
2	J4_8CRE_006	8CRE	0.0000	0	1	LSU rRNA	G	2108	A	2109	C	2110	U	2111	G	2112	*	C	2124	A	2125	U	2126	A	2127	G	2128	*	U	2164	G	2165	A	2166	U	2167	U	2168	*	A	2295	U	2296	U	2297	A	2298	A	2299	C	2300	cWW	tSW	ntHSa	tHS	cWW	tHS	cWW	ntHS	cWW
3	J4_4V9F_007	4V9F	0.0838	0	0	LSU rRNA	G	1828	A	1829	C	1830	U	1831	G	1832	*	C	1844	A	1845	U	1846	A	1847	G	1848	*	U	1883	G	1884	A	1885	A	1886	U	1887	*	A	2015	U	2016	U	2017	A	2018	A	2019	C	2020	cWW	tSW	ntHSa	ntHS	cWW	tHS	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACUGCAUAGUGAUU*AUUAAC	2
GACUGCAUAGUGAAU*AUUAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUAUAGAU*UUAA	2
ACUAUAGAA*UUAA	1

Release history

Release	3.95	3.96	3.97
Date	2025-03-26	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Heat map statistics: Min 0.06 | Avg 0.05 | Max 0.09

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Coloring options: Nucleotide numbers

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