J4_9G1Z_007
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9G1Z|1|1|U|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G1Z_007 not in the Motif Atlas
- Homologous match to J4_8CRE_007
- Geometric discrepancy: 0.0502
- The information below is about J4_8CRE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_63658.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 1
Unit IDs
9G1Z|1|1|C|2170
9G1Z|1|1|U|2171
9G1Z|1|1|G|2172
*
9G1Z|1|1|C|2226
9G1Z|1|1|G|2227
*
9G1Z|1|1|C|2245
9G1Z|1|1|U|2246
9G1Z|1|1|U|2247
9G1Z|1|1|A|2248
9G1Z|1|1|A|2249
9G1Z|1|1|G|2250
9G1Z|1|1|G|2251
9G1Z|1|1|U|2252
9G1Z|1|1|A|2253
9G1Z|1|1|G|2254
*
9G1Z|1|1|U|2288
9G1Z|1|1|G|2289
9G1Z|1|1|A|2290
9G1Z|1|1|A|2291
9G1Z|1|1|U|2292
9G1Z|1|1|G|2293
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41
- Chain j
- Ribosomal 60S subunit protein L2A
Coloring options: