J4_9G33_001

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAACGG*CCGG

Length

23 nucleotides

Bulged bases

9G33|1|D3|A|359, 9G33|1|D3|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G33|1|D3|C|99
9G33|1|D3|A|100
9G33|1|D3|U|101
9G33|1|D3|U|102
9G33|1|D3|A|103
9G33|1|D3|A|104
9G33|1|D3|A|105
9G33|1|D3|U|106
9G33|1|D3|C|107
*
9G33|1|D3|G|307
9G33|1|D3|C|308
9G33|1|D3|C|309
*
9G33|1|D3|G|357
9G33|1|D3|U|358
9G33|1|D3|A|359
9G33|1|D3|A|360
9G33|1|D3|C|361
9G33|1|D3|G|362
9G33|1|D3|G|363
*
9G33|1|D3|C|381
9G33|1|D3|C|382
9G33|1|D3|G|383
9G33|1|D3|G|384

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DI

40S ribosomal protein S8-A

Chain DL

40S ribosomal protein S11-A