J4_9G6J_001
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 9G6J|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_001 not in the Motif Atlas
- Homologous match to J4_8CRE_001
- Geometric discrepancy: 0.054
- The information below is about J4_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|1|U|111
9G6J|1|1|C|112
*
9G6J|1|1|G|267
9G6J|1|1|A|268
9G6J|1|1|G|269
9G6J|1|1|U|270
9G6J|1|1|C|271
9G6J|1|1|G|272
*
9G6J|1|1|C|293
9G6J|1|1|U|294
9G6J|1|1|A|295
9G6J|1|1|A|296
9G6J|1|1|G|297
9G6J|1|1|U|298
9G6J|1|1|G|299
*
9G6J|1|1|U|316
9G6J|1|1|A|317
9G6J|1|1|A|318
9G6J|1|1|A|319
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AJ
- 60S ribosomal protein L36
- Chain t
- 60S ribosomal protein L13
- Chain v
- Ribosomal protein L15
Coloring options: