J4_9G6J_002
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_002 not in the Motif Atlas
- Homologous match to J4_8CRE_002
- Geometric discrepancy: 0.1178
- The information below is about J4_8CRE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|C|184
9G6J|1|1|U|185
9G6J|1|1|A|186
9G6J|1|1|U|187
9G6J|1|1|G|188
*
9G6J|1|1|C|204
9G6J|1|1|G|205
9G6J|1|1|U|206
9G6J|1|1|C|207
*
9G6J|1|1|G|211
9G6J|1|1|A|212
9G6J|1|1|G|213
*
9G6J|1|1|C|225
9G6J|1|1|G|226
9G6J|1|1|U|227
9G6J|1|1|G|228
9G6J|1|1|C|229
9G6J|1|1|G|230
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain l
- Ribosomal 60S subunit protein L4B
Coloring options: