J4_9G6J_009
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_009 not in the Motif Atlas
- Homologous match to J4_8CRE_009
- Geometric discrepancy: 0.0553
- The information below is about J4_8CRE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|U|2982
9G6J|1|1|A|2983
9G6J|1|1|A|2984
*
9G6J|1|1|U|3014
9G6J|1|1|C|3015
*
9G6J|1|1|G|3070
9G6J|1|1|C|3071
9G6J|1|1|U|3072
*
9G6J|1|1|A|3106
9G6J|1|1|U|3107
9G6J|1|1|G|3108
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 6
- Ribosomal 60S subunit protein L23B
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal 60S subunit protein L16A
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