J4_9G6J_011
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9G6J|1|A|A|1011, 9G6J|1|A|C|1013, 9G6J|1|A|U|1014, 9G6J|1|A|A|1015, 9G6J|1|A|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_011 not in the Motif Atlas
- Homologous match to J4_8CRE_022
- Geometric discrepancy: 0.0565
- The information below is about J4_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G6J|1|A|A|620
9G6J|1|A|A|621
9G6J|1|A|G|622
*
9G6J|1|A|C|960
9G6J|1|A|G|961
9G6J|1|A|A|962
9G6J|1|A|A|963
9G6J|1|A|A|964
9G6J|1|A|G|965
*
9G6J|1|A|C|1006
9G6J|1|A|C|1007
9G6J|1|A|A|1008
9G6J|1|A|U|1009
9G6J|1|A|A|1010
9G6J|1|A|A|1011
9G6J|1|A|A|1012
9G6J|1|A|C|1013
9G6J|1|A|U|1014
9G6J|1|A|A|1015
9G6J|1|A|U|1016
9G6J|1|A|G|1017
*
9G6J|1|A|U|1088
9G6J|1|A|U|1089
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- Small ribosomal subunit protein eS32
- Chain M
- Ribosomal 40S subunit protein S11A
- Chain O
- Ribosomal 40S subunit protein S13
- Chain P
- Ribosomal 40S subunit protein S14B
- Chain X
- 40S ribosomal protein S22-A
- Chain Y
- Ribosomal 40S subunit protein S23B
- Chain b
- 40S ribosomal protein S26
Coloring options: