J4_9G8M_002

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9G8M|1|L5|C|216, 9G8M|1|L5|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|C|196
9G8M|1|L5|A|197
9G8M|1|L5|A|198
9G8M|1|L5|G|199
*
9G8M|1|L5|C|215
9G8M|1|L5|C|216
9G8M|1|L5|C|217
9G8M|1|L5|A|218
9G8M|1|L5|G|219
9G8M|1|L5|C|220
9G8M|1|L5|C|221
9G8M|1|L5|C|222
*
9G8M|1|L5|G|226
9G8M|1|L5|A|227
9G8M|1|L5|C|228
*
9G8M|1|L5|G|240
9G8M|1|L5|G|241
9G8M|1|L5|U|242
9G8M|1|L5|A|243
9G8M|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26