J4_9G8M_003

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUCC*GCCGG*CCACGCGCGCG*CGGCGGAGCGA

Length

32 nucleotides

Bulged bases

9G8M|1|L5|C|1237, 9G8M|1|L5|C|1272, 9G8M|1|L5|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|U|980
9G8M|1|L5|C|981
9G8M|1|L5|U|982
9G8M|1|L5|C|983
9G8M|1|L5|C|984
*
9G8M|1|L5|G|1070
9G8M|1|L5|C|1071
9G8M|1|L5|C|1072
9G8M|1|L5|G|1073
9G8M|1|L5|G|1074
*
9G8M|1|L5|C|1236
9G8M|1|L5|C|1237
9G8M|1|L5|A|1238
9G8M|1|L5|C|1239
9G8M|1|L5|G|1240
9G8M|1|L5|C|1241
9G8M|1|L5|G|1242
9G8M|1|L5|C|1243
9G8M|1|L5|G|1244
9G8M|1|L5|C|1245
9G8M|1|L5|G|1246
*
9G8M|1|L5|C|1264
9G8M|1|L5|G|1265
9G8M|1|L5|G|1266
9G8M|1|L5|C|1267
9G8M|1|L5|G|1268
9G8M|1|L5|G|1269
9G8M|1|L5|A|1270
9G8M|1|L5|G|1271
9G8M|1|L5|C|1272
9G8M|1|L5|G|1273
9G8M|1|L5|A|1274

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30