J4_9G8M_006

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9G8M|1|L5|A|2694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|2616
9G8M|1|L5|G|2617
*
9G8M|1|L5|U|2635
9G8M|1|L5|G|2636
9G8M|1|L5|U|2637
9G8M|1|L5|G|2638
9G8M|1|L5|A|2639
9G8M|1|L5|A|2640
*
9G8M|1|L5|U|2690
9G8M|1|L5|G|2691
9G8M|1|L5|G|2692
9G8M|1|L5|A|2693
9G8M|1|L5|A|2694
9G8M|1|L5|A|2695
9G8M|1|L5|G|2696
*
9G8M|1|L5|U|2716
9G8M|1|L5|C|2717

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38