3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAGC*GCGCG*CAG*CGUAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GFT|1|AV|G|297
9GFT|1|AV|G|298
9GFT|1|AV|A|299
9GFT|1|AV|A|300
9GFT|1|AV|G|301
9GFT|1|AV|C|302
*
9GFT|1|AV|G|315
9GFT|1|AV|C|316
9GFT|1|AV|G|317
9GFT|1|AV|C|318
9GFT|1|AV|G|319
*
9GFT|1|AV|C|323
9GFT|1|AV|A|324
9GFT|1|AV|G|325
*
9GFT|1|AV|C|337
9GFT|1|AV|G|338
9GFT|1|AV|U|339
9GFT|1|AV|A|340
9GFT|1|AV|C|341

Current chains

Chain AV
23S RNA

Nearby chains

Chain AZ
Large ribosomal subunit protein uL4
Chain Ap
Large ribosomal subunit protein uL24

Coloring options:

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