J4_9GFT_011

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGC*GCGCG*CAG*CGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GFT|1|AV|G|297
9GFT|1|AV|G|298
9GFT|1|AV|A|299
9GFT|1|AV|A|300
9GFT|1|AV|G|301
9GFT|1|AV|C|302
*
9GFT|1|AV|G|315
9GFT|1|AV|C|316
9GFT|1|AV|G|317
9GFT|1|AV|C|318
9GFT|1|AV|G|319
*
9GFT|1|AV|C|323
9GFT|1|AV|A|324
9GFT|1|AV|G|325
*
9GFT|1|AV|C|337
9GFT|1|AV|G|338
9GFT|1|AV|U|339
9GFT|1|AV|A|340
9GFT|1|AV|C|341

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ap

Large ribosomal subunit protein uL24