J4_9GFT_023

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_023 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0899

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9GFT|1|N|G|297
9GFT|1|N|G|298
9GFT|1|N|A|299
9GFT|1|N|A|300
9GFT|1|N|G|301
*
9GFT|1|N|C|316
9GFT|1|N|G|317
9GFT|1|N|C|318
9GFT|1|N|G|319
*
9GFT|1|N|C|323
9GFT|1|N|A|324
9GFT|1|N|G|325
*
9GFT|1|N|C|337
9GFT|1|N|G|338
9GFT|1|N|U|339
9GFT|1|N|A|340
9GFT|1|N|C|341

Current chains

Chain N

23S RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain h

Large ribosomal subunit protein uL24