J4_9GGR_002
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 9GGR|1|0|C|183, 9GGR|1|0|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GGR_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1822
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GGR|1|0|G|142
9GGR|1|0|A|143
9GGR|1|0|G|144
*
9GGR|1|0|C|178
9GGR|1|0|A|179
9GGR|1|0|U|180
9GGR|1|0|A|181
9GGR|1|0|A|182
9GGR|1|0|C|183
9GGR|1|0|G|184
*
9GGR|1|0|C|193
9GGR|1|0|C|194
9GGR|1|0|A|195
9GGR|1|0|A|196
9GGR|1|0|A|197
9GGR|1|0|G|198
*
9GGR|1|0|U|219
9GGR|1|0|G|220
9GGR|1|0|C|221
Current chains
- Chain 0
- 16S ribosomal RNA
Nearby chains
- Chain u
- Small ribosomal subunit protein bS20
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