J4_9GGR_010
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 9GGR|1|AV|U|405
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GGR_010 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1252
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9GGR|1|AV|C|268
9GGR|1|AV|C|269
*
9GGR|1|AV|G|370
9GGR|1|AV|A|371
9GGR|1|AV|G|372
9GGR|1|AV|U|373
9GGR|1|AV|A|374
9GGR|1|AV|G|375
*
9GGR|1|AV|U|399
9GGR|1|AV|G|400
9GGR|1|AV|A|401
9GGR|1|AV|A|402
9GGR|1|AV|U|403
9GGR|1|AV|A|404
9GGR|1|AV|U|405
9GGR|1|AV|G|406
*
9GGR|1|AV|C|421
9GGR|1|AV|A|422
9GGR|1|AV|A|423
9GGR|1|AV|G|424
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain Ac
- Large ribosomal subunit protein bL9
- Chain As
- Large ribosomal subunit protein bL28
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