J4_9GGR_015
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9GGR|1|AV|G|1341
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GGR_015 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.1081
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GGR|1|AV|U|1313
9GGR|1|AV|C|1314
*
9GGR|1|AV|G|1338
9GGR|1|AV|G|1339
9GGR|1|AV|U|1340
9GGR|1|AV|G|1341
9GGR|1|AV|A|1342
9GGR|1|AV|G|1343
*
9GGR|1|AV|C|1404
9GGR|1|AV|U|1405
*
9GGR|1|AV|A|1597
9GGR|1|AV|A|1598
9GGR|1|AV|U|1599
9GGR|1|AV|C|1600
9GGR|1|AV|G|1601
9GGR|1|AV|U|1602
9GGR|1|AV|A|1603
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain Ao
- Large ribosomal subunit protein uL23
Coloring options: