J4_9GHA_003

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GHA|1|A|C|183, 9GHA|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_003 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1274

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHA|1|A|G|142
9GHA|1|A|A|143
9GHA|1|A|G|144
*
9GHA|1|A|C|178
9GHA|1|A|A|179
9GHA|1|A|U|180
9GHA|1|A|A|181
9GHA|1|A|A|182
9GHA|1|A|C|183
9GHA|1|A|G|184
*
9GHA|1|A|C|193
9GHA|1|A|C|194
9GHA|1|A|A|195
9GHA|1|A|A|196
9GHA|1|A|A|197
9GHA|1|A|G|198
*
9GHA|1|A|U|219
9GHA|1|A|G|220
9GHA|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20