J4_9GHA_005

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHA|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1226

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHA|1|a|C|268
9GHA|1|a|C|269
*
9GHA|1|a|G|370
9GHA|1|a|A|371
9GHA|1|a|G|372
9GHA|1|a|U|373
9GHA|1|a|A|374
9GHA|1|a|G|375
*
9GHA|1|a|U|399
9GHA|1|a|G|400
9GHA|1|a|A|401
9GHA|1|a|A|402
9GHA|1|a|U|403
9GHA|1|a|A|404
9GHA|1|a|U|405
9GHA|1|a|G|406
*
9GHA|1|a|C|421
9GHA|1|a|A|422
9GHA|1|a|A|423
9GHA|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28