J4_9GHA_010

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9GHA|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHA_010 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.041

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|U|1313
9GHA|1|a|C|1314
*
9GHA|1|a|G|1338
9GHA|1|a|G|1339
9GHA|1|a|U|1340
9GHA|1|a|G|1341
9GHA|1|a|A|1342
9GHA|1|a|G|1343
*
9GHA|1|a|C|1404
9GHA|1|a|U|1405
*
9GHA|1|a|A|1597
9GHA|1|a|A|1598
9GHA|1|a|U|1599
9GHA|1|a|C|1600
9GHA|1|a|G|1601
9GHA|1|a|U|1602
9GHA|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23