J4_9GHB_002

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GHB|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHB_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0957

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHB|1|A|G|142
9GHB|1|A|A|143
9GHB|1|A|G|144
*
9GHB|1|A|C|178
9GHB|1|A|A|179
9GHB|1|A|U|180
9GHB|1|A|A|181
9GHB|1|A|A|182
9GHB|1|A|C|183
9GHB|1|A|G|184
*
9GHB|1|A|C|193
9GHB|1|A|C|194
9GHB|1|A|A|195
9GHB|1|A|A|196
9GHB|1|A|A|197
9GHB|1|A|G|198
*
9GHB|1|A|U|219
9GHB|1|A|G|220
9GHB|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20