J4_9GHB_005

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHB|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHB_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1181

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHB|1|a|C|268
9GHB|1|a|C|269
*
9GHB|1|a|G|370
9GHB|1|a|A|371
9GHB|1|a|G|372
9GHB|1|a|U|373
9GHB|1|a|A|374
9GHB|1|a|G|375
*
9GHB|1|a|U|399
9GHB|1|a|G|400
9GHB|1|a|A|401
9GHB|1|a|A|402
9GHB|1|a|U|403
9GHB|1|a|A|404
9GHB|1|a|U|405
9GHB|1|a|G|406
*
9GHB|1|a|C|421
9GHB|1|a|A|422
9GHB|1|a|A|423
9GHB|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28