J4_9GHC_005

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHC|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHC_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1215

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHC|1|a|C|268
9GHC|1|a|C|269
*
9GHC|1|a|G|370
9GHC|1|a|A|371
9GHC|1|a|G|372
9GHC|1|a|U|373
9GHC|1|a|A|374
9GHC|1|a|G|375
*
9GHC|1|a|U|399
9GHC|1|a|G|400
9GHC|1|a|A|401
9GHC|1|a|A|402
9GHC|1|a|U|403
9GHC|1|a|A|404
9GHC|1|a|U|405
9GHC|1|a|G|406
*
9GHC|1|a|C|421
9GHC|1|a|A|422
9GHC|1|a|A|423
9GHC|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28