J4_9GHD_001

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9GHD|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1466

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9GHD|1|A|G|115
9GHD|1|A|A|116
9GHD|1|A|G|117
9GHD|1|A|U|118
9GHD|1|A|A|119
9GHD|1|A|A|120
9GHD|1|A|U|121
9GHD|1|A|G|122
*
9GHD|1|A|U|239
9GHD|1|A|G|240
*
9GHD|1|A|C|286
9GHD|1|A|U|287
9GHD|1|A|A|288
9GHD|1|A|G|289
*
9GHD|1|A|C|311
9GHD|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17