J4_9GHD_002

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GHD|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0922

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHD|1|A|G|142
9GHD|1|A|A|143
9GHD|1|A|G|144
*
9GHD|1|A|C|178
9GHD|1|A|A|179
9GHD|1|A|U|180
9GHD|1|A|A|181
9GHD|1|A|A|182
9GHD|1|A|C|183
9GHD|1|A|G|184
*
9GHD|1|A|C|193
9GHD|1|A|C|194
9GHD|1|A|A|195
9GHD|1|A|A|196
9GHD|1|A|A|197
9GHD|1|A|G|198
*
9GHD|1|A|U|219
9GHD|1|A|G|220
9GHD|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20