J4_9GHD_005

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHD|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1241

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHD|1|a|C|268
9GHD|1|a|C|269
*
9GHD|1|a|G|370
9GHD|1|a|A|371
9GHD|1|a|G|372
9GHD|1|a|U|373
9GHD|1|a|A|374
9GHD|1|a|G|375
*
9GHD|1|a|U|399
9GHD|1|a|G|400
9GHD|1|a|A|401
9GHD|1|a|A|402
9GHD|1|a|U|403
9GHD|1|a|A|404
9GHD|1|a|U|405
9GHD|1|a|G|406
*
9GHD|1|a|C|421
9GHD|1|a|A|422
9GHD|1|a|A|423
9GHD|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28