J4_9GHE_002

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GHE|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHE_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0831

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHE|1|A|G|142
9GHE|1|A|A|143
9GHE|1|A|G|144
*
9GHE|1|A|C|178
9GHE|1|A|A|179
9GHE|1|A|U|180
9GHE|1|A|A|181
9GHE|1|A|A|182
9GHE|1|A|C|183
9GHE|1|A|G|184
*
9GHE|1|A|C|193
9GHE|1|A|C|194
9GHE|1|A|A|195
9GHE|1|A|A|196
9GHE|1|A|A|197
9GHE|1|A|G|198
*
9GHE|1|A|U|219
9GHE|1|A|G|220
9GHE|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20