J4_9GHE_005

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHE|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHE_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1213

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHE|1|a|C|268
9GHE|1|a|C|269
*
9GHE|1|a|G|370
9GHE|1|a|A|371
9GHE|1|a|G|372
9GHE|1|a|U|373
9GHE|1|a|A|374
9GHE|1|a|G|375
*
9GHE|1|a|U|399
9GHE|1|a|G|400
9GHE|1|a|A|401
9GHE|1|a|A|402
9GHE|1|a|U|403
9GHE|1|a|A|404
9GHE|1|a|U|405
9GHE|1|a|G|406
*
9GHE|1|a|C|421
9GHE|1|a|A|422
9GHE|1|a|A|423
9GHE|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28