J4_9GHF_001

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9GHF|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1476

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9GHF|1|A|G|115
9GHF|1|A|A|116
9GHF|1|A|G|117
9GHF|1|A|U|118
9GHF|1|A|A|119
9GHF|1|A|A|120
9GHF|1|A|U|121
9GHF|1|A|G|122
*
9GHF|1|A|U|239
9GHF|1|A|G|240
*
9GHF|1|A|C|286
9GHF|1|A|U|287
9GHF|1|A|A|288
9GHF|1|A|G|289
*
9GHF|1|A|C|311
9GHF|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17