J4_9GHF_002

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GHF|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0908

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHF|1|A|G|142
9GHF|1|A|A|143
9GHF|1|A|G|144
*
9GHF|1|A|C|178
9GHF|1|A|A|179
9GHF|1|A|U|180
9GHF|1|A|A|181
9GHF|1|A|A|182
9GHF|1|A|C|183
9GHF|1|A|G|184
*
9GHF|1|A|C|193
9GHF|1|A|C|194
9GHF|1|A|A|195
9GHF|1|A|A|196
9GHF|1|A|A|197
9GHF|1|A|G|198
*
9GHF|1|A|U|219
9GHF|1|A|G|220
9GHF|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20