J4_9GHF_005

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GHF|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1202

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|C|268
9GHF|1|a|C|269
*
9GHF|1|a|G|370
9GHF|1|a|A|371
9GHF|1|a|G|372
9GHF|1|a|U|373
9GHF|1|a|A|374
9GHF|1|a|G|375
*
9GHF|1|a|U|399
9GHF|1|a|G|400
9GHF|1|a|A|401
9GHF|1|a|A|402
9GHF|1|a|U|403
9GHF|1|a|A|404
9GHF|1|a|U|405
9GHF|1|a|G|406
*
9GHF|1|a|C|421
9GHF|1|a|A|422
9GHF|1|a|A|423
9GHF|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28