J4_9GHF_008

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9GHF|1|a|G|1271, 9GHF|1|a|A|1272, 9GHF|1|a|U|1273, 9GHF|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0496

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHF|1|a|C|1270
9GHF|1|a|G|1271
9GHF|1|a|A|1272
9GHF|1|a|U|1273
9GHF|1|a|A|1274
9GHF|1|a|A|1275
9GHF|1|a|A|1276
*
9GHF|1|a|U|1294
9GHF|1|a|C|1295
*
9GHF|1|a|G|1645
9GHF|1|a|C|1646
9GHF|1|a|U|1647
9GHF|1|a|U|1648
*
9GHF|1|a|A|2009
9GHF|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32