J4_9GHF_015

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_015 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0529

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9GHF|1|a|G|2643
9GHF|1|a|G|2644
9GHF|1|a|G|2645
9GHF|1|a|C|2646
*
9GHF|1|a|G|2674
9GHF|1|a|A|2675
9GHF|1|a|C|2676
*
9GHF|1|a|G|2731
9GHF|1|a|G|2732
9GHF|1|a|A|2733
9GHF|1|a|A|2734
9GHF|1|a|G|2735
*
9GHF|1|a|U|2769
9GHF|1|a|G|2770
9GHF|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14