J4_9GHG_005

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9GHG|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHG_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0783

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9GHG|1|A|G|1347
9GHG|1|A|U|1348
9GHG|1|A|U|1349
9GHG|1|A|U|1350
9GHG|1|A|C|1351
*
9GHG|1|A|G|1375
9GHG|1|A|G|1376
9GHG|1|A|U|1377
9GHG|1|A|U|1378
9GHG|1|A|A|1379
9GHG|1|A|G|1380
*
9GHG|1|A|C|1441
9GHG|1|A|C|1442
*
9GHG|1|A|G|1641
9GHG|1|A|C|1642
9GHG|1|A|C|1643
9GHG|1|A|C|1644
9GHG|1|A|G|1645
9GHG|1|A|U|1646
9GHG|1|A|A|1647
9GHG|1|A|C|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23