J4_9GHH_015

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

9GHH|1|a|U|183, 9GHH|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GHH|1|a|G|142
9GHH|1|a|A|143
9GHH|1|a|C|144
*
9GHH|1|a|G|178
9GHH|1|a|A|179
9GHH|1|a|U|180
9GHH|1|a|A|181
9GHH|1|a|A|182
9GHH|1|a|U|183
9GHH|1|a|A|184
9GHH|1|a|U|185
*
9GHH|1|a|A|206
9GHH|1|a|G|207
9GHH|1|a|U|208
9GHH|1|a|G|209
9GHH|1|a|A|210
9GHH|1|a|A|211
9GHH|1|a|A|212
9GHH|1|a|G|213
*
9GHH|1|a|C|227
9GHH|1|a|A|228
9GHH|1|a|C|229

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20