J4_9GR1_001

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9GR1|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GR1_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2633

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9GR1|1|A|G|115
9GR1|1|A|A|116
9GR1|1|A|G|117
9GR1|1|A|U|118
9GR1|1|A|A|119
9GR1|1|A|A|120
9GR1|1|A|U|121
9GR1|1|A|G|122
*
9GR1|1|A|U|239
9GR1|1|A|G|240
*
9GR1|1|A|C|286
9GR1|1|A|U|287
9GR1|1|A|A|288
9GR1|1|A|G|289
*
9GR1|1|A|C|311
9GR1|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17