J4_9GR1_002

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GR1|1|A|C|183, 9GR1|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GR1_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2323

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GR1|1|A|G|142
9GR1|1|A|A|143
9GR1|1|A|G|144
*
9GR1|1|A|C|178
9GR1|1|A|A|179
9GR1|1|A|U|180
9GR1|1|A|A|181
9GR1|1|A|A|182
9GR1|1|A|C|183
9GR1|1|A|G|184
*
9GR1|1|A|C|193
9GR1|1|A|C|194
9GR1|1|A|A|195
9GR1|1|A|A|196
9GR1|1|A|A|197
9GR1|1|A|G|198
*
9GR1|1|A|U|219
9GR1|1|A|G|220
9GR1|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20