J4_9GR1_016

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GR1_016 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.047

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9GR1|1|a|G|2647
9GR1|1|a|G|2648
9GR1|1|a|G|2649
9GR1|1|a|C|2650
*
9GR1|1|a|G|2678
9GR1|1|a|A|2679
9GR1|1|a|C|2680
*
9GR1|1|a|G|2735
9GR1|1|a|G|2736
9GR1|1|a|A|2737
9GR1|1|a|A|2738
9GR1|1|a|G|2739
*
9GR1|1|a|U|2773
9GR1|1|a|G|2774
9GR1|1|a|C|2775

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14