J4_9GUL_004

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9GUL|1|L5|A|2366, 9GUL|1|L5|U|2369, 9GUL|1|L5|A|2370, 9GUL|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|OMC|2365
9GUL|1|L5|A|2366
9GUL|1|L5|A|2367
9GUL|1|L5|A|2368
9GUL|1|L5|U|2369
9GUL|1|L5|A|2370
9GUL|1|L5|U|2371
*
9GUL|1|L5|A|2389
9GUL|1|L5|G|2390
9GUL|1|L5|G|2391
*
9GUL|1|L5|C|2824
9GUL|1|L5|A|2825
9GUL|1|L5|U|2826
9GUL|1|L5|G|2827
9GUL|1|L5|U|2828
9GUL|1|L5|U|2829
*
9GUL|1|L5|A|3856
9GUL|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31