J4_9GUQ_002

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GUQ|1|A|C|183, 9GUQ|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GUQ_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1684

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GUQ|1|A|G|142
9GUQ|1|A|A|143
9GUQ|1|A|G|144
*
9GUQ|1|A|C|178
9GUQ|1|A|A|179
9GUQ|1|A|U|180
9GUQ|1|A|A|181
9GUQ|1|A|A|182
9GUQ|1|A|C|183
9GUQ|1|A|G|184
*
9GUQ|1|A|C|193
9GUQ|1|A|C|194
9GUQ|1|A|A|195
9GUQ|1|A|A|196
9GUQ|1|A|A|197
9GUQ|1|A|G|198
*
9GUQ|1|A|U|219
9GUQ|1|A|G|220
9GUQ|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20