J4_9GUS_002

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GUS|1|A|C|183, 9GUS|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GUS_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1088

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GUS|1|A|G|142
9GUS|1|A|A|143
9GUS|1|A|G|144
*
9GUS|1|A|C|178
9GUS|1|A|A|179
9GUS|1|A|U|180
9GUS|1|A|A|181
9GUS|1|A|A|182
9GUS|1|A|C|183
9GUS|1|A|G|184
*
9GUS|1|A|C|193
9GUS|1|A|C|194
9GUS|1|A|A|195
9GUS|1|A|A|196
9GUS|1|A|A|197
9GUS|1|A|G|198
*
9GUS|1|A|U|219
9GUS|1|A|G|220
9GUS|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20